Author

Simon Anders

Primary ORCID profile (0000-0003-4868-1805 · 18 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Simon AndersiD18 papers · Heidelberg University

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Wolfgang HuberiD· 3 shared Aleksandra Pekowska· 1 shared Bernd Klaus· 1 shared Eileen E. M. FurlongiD· 1 shared Felix A. Klein· 1 shared Felix Alexander Klein· 1 shared Lars Michael Steinmetz· 1 shared Malgorzata Oles· 1 shared

Activity by Year

2014-2015 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBioinformatics

Wolfgang HuberORCID

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3 papers

Recent·Most cited

FourCSeq: Analysis of 4C sequencing data

Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber

FourCSeq identifies specific genomic interactions in 4C sequencing data and detects changes across conditions using statistical methods.

bioRxiv · May 12, 2015Bioinformatics

HTSeq - A Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber

HTSeq provides a Python framework for handling high-throughput sequencing data, including tools for RNA-Seq preprocessing and differential expression analysis.

Bioinformatics · Sep 25, 2014Peer-reviewedBioinformatics

Neural lineage induction reveals multi-scale dynamics of 3D chromatin organization

Aleksandra Pekowska, Bernd Klaus, Felix Alexander Klein, Simon Anders, Malgorzata Oles, Lars Michael Steinmetz, Paul Bertone, Wolfgang Huber

The paper uses TCC sequencing to study 3D chromatin organization during neural induction in mouse cells, finding widespread changes in inter-chromosomal contacts and a role for euchromatic domains in pluripotent cells.

bioRxiv · Apr 11, 2014 · PreprintMolecular Biology