Author

Sofya Lipnitskaya

Johannes Gutenberg University Mainz

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Holger KleiniD· 1 shared Kolja BeckeriD· 1 shared Stefan LegewieiD· 1 shared Yang SheniD· 1 shared

Activity by Year

2022-2022 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Holger KleinORCID

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1 paper

Recent·Most cited

Machine learning-assisted identification of factors contributing to the technical variability between bulk and single-cell RNA-seq experiments

Sofya Lipnitskaya, Yang Shen, Stefan Legewie, Holger Klein, Kolja Becker

The paper identifies factors contributing to technical variability between bulk and single-cell RNA-seq experiments and introduces FAVSeq, a machine learning pipeline to detect these factors.

bioRxiv · Jan 6, 2022 · PreprintBioinformatics