Author

Stefanie Nachtweide

Universität Greifswald

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Benedict PateniD· 2 shared Ian T. FiddesiD· 2 shared Mario StankeiD· 2 shared Thomas KeaneiD· 2 shared Alvis BrāzmaiD· 1 shared Ambre-Aurore Josselin· 1 shared Amonida ZadissaiD· 1 shared Anthony DoraniD· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Benedict PatenORCID

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2 papers

Recent·Most cited

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

Ian T. Fiddes, Joel C. Armstrong, Mark Diekhans, Stefanie Nachtweide, Zev N. Kronenberg, Jason G. Underwood, David Gordon, Dent A. Earl, Thomas Keane, Evan E. Eichler, David H. Haussler, Mario Stanke, Benedict Paten

The paper introduces CAT, a toolkit for simultaneous clade and personal genome annotation, demonstrating its ability to discover novel genes and improve cross-species RNA expression analysis.

Genome Research · Jul 1, 2018Peer-reviewedBioinformatics

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

David Thybert, Maša Roller, Fábio C. P. Navarro, Ian T. Fiddes, Ian Streeter, Christine Feig, David Martín‐Gálvez, Mikhail Kolmogorov, Václav Janoušek, Wasiu A. Akanni, Bronwen L. Aken, Sarah Aldridge, Varshith Chakrapani, William Chow, Laura Clarke, , Paul Flicek

The paper compares genome assemblies of Mus caroli and Mus pahari with Mus musculus and Rattus norvegicus to reveal lineage-specific evolutionary mechanisms, particularly repeat-associated processes.

Genome Research · Apr 1, 2018Peer-reviewedGenomics