Maša Roller

This study investigates how germline and somatic genetic variations affect mitochondrial DNA content, mutation patterns, and gene expression in liver tumors across four mouse strains.

This paper introduces a large language model for plant genomics that provides state-of-the-art predictions for regulatory annotations and variant prioritization, along with a benchmark dataset for deep learning methods.

The paper identifies DNA methylation patterns at TF binding sites across species, linking them to functional roles and evolutionary changes.

The paper investigates how LINE elements contribute to the evolution of tissue-specific and shared regulatory regions across mammalian genomes.

The paper investigates how CTCF binding patterns across species contribute to the stability and evolution of TAD boundaries through clustered binding sites.

The paper compares genome assemblies of Mus caroli and Mus pahari with Mus musculus and Rattus norvegicus to reveal lineage-specific evolutionary mechanisms, particularly repeat-associated processes.