Author

Sukanya Denni

Université de Bordeaux

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:simulation· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Benjamin LinardiD· 2 shared Ludovic DuvauxiD· 2 shared Alexis GroppiiD· 1 shared Alexis MergeziD· 1 shared Amandine CornilleiD· 1 shared Ismael BlanchardiD· 1 shared Johann ConfaisiD· 1 shared Lucien PiatiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Benjamin LinardORCID

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2 papers

Recent·Most cited

Simulating population pangenomes under coalescent demographic models with MSpangenome

Lucien Piat, Sukanya Denni, Siegfried Dubois, Benjamin Linard, Ludovic Duvaux

MSpangenome simulates population pangenomes from coalescent demographic models to benchmark graph construction tools.

bioRxiv · Jul 3, 2026 · PreprintBioinformatics

Building pangenomes for domesticated and wild tree species: genomic complexity and strategies

Ismael Blanchard, Quynh Trang Bui, Alexis Mergez, Sukanya Denni, Amandine Cornille, Alexis Groppi, Johann Confais, Ludovic Duvaux, Véronique Decroocq‐Ferrant, Benjamin Linard

This paper constructs cross-taxon pangenomes for tree species, identifies structural variants, and evaluates their functional relevance using the Armeniaca taxonomic section.

bioRxiv · Jul 22, 2025 · PreprintBioinformatics