Alexis Mergez

SPA-C improves genome scaffolding by combining Hi-C data with a CNN and graph-solving algorithm, outperforming existing methods on benchmark genomes.

Pan1C is a pipeline that builds chromosome-level pangenome graphs, improving alignment and variant calling by integrating multiple strategies and benchmarked across different species.

This paper constructs cross-taxon pangenomes for tree species, identifies structural variants, and evaluates their functional relevance using the Armeniaca taxonomic section.