A Simplest Bioinformatics Pipeline for Whole Transcriptome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis.
Ayam Gupta, Sonal Gupta, Suresh Kumar Jatawa, Ashwani Kumar, Prashanth Suravajhala
The paper benchmarks the cufflinks-cuffdiff pipeline for RNA-Seq analysis and provides a protocol for whole transcriptome shotgun sequencing and downstream analysis.
bioRxiv · Nov 9, 2019 · PreprintBioinformatics