Author

Ayam Gupta

Indian Institute of Technology MadrasORCID 0009-0002-3608-0439Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ashwani KumariD· 1 shared Himanshu SinhaiD· 1 shared Karthik RamaniD· 1 shared Manikandan NarayananiD· 1 shared Prashanth SuravajhalaiD· 1 shared Sonal GuptaiD· 1 shared Suresh Kumar Jatawa· 1 shared Venkatesh KamarajiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ashwani KumarORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GViNC: an innovative framework for genome graph comparison reveals hidden patterns in the genetic diversity of human populations

Venkatesh Kamaraj, Ayam Gupta, Karthik Raman, Manikandan Narayanan, Himanshu Sinha

GViNC compares genome graphs to reveal ancestry-specific genetic diversity patterns and key variant regions in human populations.

NAR Genomics and Bioinformatics · Jul 4, 2025Peer-reviewedGenomics

A Simplest Bioinformatics Pipeline for Whole Transcriptome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis.

Ayam Gupta, Sonal Gupta, Suresh Kumar Jatawa, Ashwani Kumar, Prashanth Suravajhala

The paper benchmarks the cufflinks-cuffdiff pipeline for RNA-Seq analysis and provides a protocol for whole transcriptome shotgun sequencing and downstream analysis.

bioRxiv · Nov 9, 2019 · PreprintBioinformatics