Author

T. Kawakatsu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:plant (other)· 3 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. Ono· 1 shared E. Kuwada· 1 shared H. Nagata· 1 shared K. Masuda· 1 shared K. Takeshita· 1 shared K. Tonosaki· 1 shared K. Ushijima· 1 shared K. Yano· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperPlant Biology

A. Ono

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3 papers

Recent·Most cited

Temporal Changes in Transcripts of MITE Transposable Elements during Rice Endosperm Development

H. Nagata, A. Ono, K. Tonosaki, T. Kawakatsu, K. Yano, Y. Kishima, T. Kinoshita

The paper examines temporal changes in MITE TE transcripts during rice endosperm development and finds dynamic up- and downregulation, with some directionally controlled transcripts.

bioRxiv · Sep 27, 2021 · PreprintPlant Biology

Genome-wide cis-decoding for expression designing in tomato using cistrome data and explainable deep learning

T. Akagi, K. Masuda, E. Kuwada, K. Takeshita, T. Kawakatsu, T. Ariizumi, Y. Kubo, K. Ushijima, S. Uchida

This study uses cistrome data and explainable deep learning to predict tomato fruit expression patterns from DNA sequences, identifying key regulatory elements involved in ripening.

bioRxiv · Jun 1, 2021 · PreprintPlant Biology

The transcriptomic landscapes of diverse rice cultivars grown under mild drought conditions

T. Kawakatsu, S. Teramoto, S. Takayasu, N. Maruyama, R. Nishijima, Y. Kitomi, Y. Uga

The paper catalogs phenomes and transcriptomes of rice cultivars under mild drought stress to identify genetic basis for drought resilience.

bioRxiv · Dec 11, 2020 · PreprintPlant Biology