Author

T. M. Pham

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Research Focus:sequence-to-function modeling· 1 Approach:statistical model· 1

Frequent Co-Authors

D. Mathews· 1 shared H. Sun· 1 shared J. D. Kahn· 1 shared K. J. Marians· 1 shared K. K. Sharp· 1 shared M. Zhu· 1 shared N. Gilhooly· 1 shared R. J. Peterson· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBiophysics

D. Mathews

Mutual co-authors in cluster

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2 papers

Recent·Most cited

DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters

T. M. Pham, T. Miffin, H. Sun, K. K. Sharp, X. Wang, M. Zhu, S. Hoshika, R. J. Peterson, S. A. Benner, J. D. Kahn, D. Mathews

This paper improves DNA structure design by introducing a new base pair alphabet with P-Z pairs and thermodynamic parameters, enhancing design accuracy and reducing off-target folding.

bioRxiv · Jun 6, 2023Biophysics

Direct Visualization of Translesion DNA Synthesis Polymerase IV at the Replisome

T. M. Pham, N. Gilhooly, K. J. Marians, S. C. Kowalczykowski

This paper shows DNA polymerase IV associates with the replisome in bacteria under unstressed conditions, slowing replication and reducing mutation risk during stress.

bioRxiv · Apr 23, 2022Biochemistry