Author

Tim Kirk

Center for Experimental and Clinical Infection Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Bioinformatics· 1

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Organism:bacteria (other)· 1 Research Focus:clustering· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam Z. RosenthaliD· 1 shared Christian L. MülleriD· 1 shared Janne Gesine ThömingiD· 1 shared Johannes OstneriD· 1 shared Roberto Olayo-AlarcóniD· 1 shared Susanne HäußleriD· 1 shared

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2024-2024 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Adam Z. RosenthalORCID

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1 paper

Recent·Most cited

BacSC: A general workflow for bacterial single-cell RNA sequencing data analysis

Johannes Ostner, Tim Kirk, Roberto Olayo-Alarcón, Janne Gesine Thöming, Adam Z. Rosenthal, Susanne Häußler, Christian L. Müller

BacSC is a computational pipeline for bacterial single-cell RNA sequencing data that automates quality control, dimension reduction, and clustering, improving subpopulation detection across multiple bacterial species.

bioRxiv · Jun 22, 2024 · PreprintBioinformatics