Method-dependent biases in cell type detection between single-cell and single-nucleus RNA sequencing in the photosymbiotic acoel Praesagittifera naikaiensis
Ryô Nakamura, Mayuko Hamada, Kenji Kobayashi, Satoshi Ansai, Mirco Dindo, Tosuke Sakagami, Yi-Jyun Luo, Yutaka Satou, Toshio Sekiguchi, Tatsuya Sakamoto
The paper compares scRNA-seq and snRNA-seq in Praesagittifera naikaiensis, finding snRNA-seq better recovers neural transcripts and reduces symbiont reads.
bioRxiv · Oct 2, 2026 · PreprintGenomics