bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting.
Kranti Konganti, Elizabeth A. Reed, Mark K. Mammel, Tunc Kayikcioglu, Rachel Binet, Karen G. Jarvis, Christina M. Ferreira, Rebecca L. Bell, Jie Zheng, Amanda Windsor, Andrea Ottesen, Christopher J. Grim, Padmini Ramachandran
bettercallsal identifies multiple Salmonella serotypes from enrichment cultures using shotgun metagenomics, outperforming existing tools in accuracy and throughput for outbreak analysis.
Frontiers in Microbiology · Aug 2, 2023Peer-reviewedGenomics