Author

Amanda Windsor

Center for Food Safety and Applied NutritionORCID 0000-0002-5192-7047Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Andrea OtteseniD· 1 shared Christina M. FerreiraiD· 1 shared Christopher J. GrimiD· 1 shared Elizabeth A. ReediD· 1 shared Jie ZhengiD· 1 shared Karen G. JarvisiD· 1 shared Kranti Konganti· 1 shared Mark K. MammeliD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Andrea OttesenORCID

Mutual co-authors in cluster

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1 paper

Recent·Most cited

bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting.

Kranti Konganti, Elizabeth A. Reed, Mark K. Mammel, Tunc Kayikcioglu, Rachel Binet, Karen G. Jarvis, Christina M. Ferreira, Rebecca L. Bell, Jie Zheng, Amanda Windsor, Andrea Ottesen, Christopher J. Grim, Padmini Ramachandran

bettercallsal identifies multiple Salmonella serotypes from enrichment cultures using shotgun metagenomics, outperforming existing tools in accuracy and throughput for outbreak analysis.

Frontiers in Microbiology · Aug 2, 2023Peer-reviewedGenomics