Author

Jie Zheng

Center for Food Safety and Applied NutritionORCID 0000-0003-3447-9681Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Jie Zheng7 papers · Shanghai Jiao Tong University

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Organism:mouse· 1

Frequent Co-Authors

Rebecca L. BelliD· 2 shared Amanda WindsoriD· 1 shared Andrea OtteseniD· 1 shared Christina M. FerreiraiD· 1 shared Christopher J. GrimiD· 1 shared Elizabeth A. ReediD· 1 shared Eric W. BrowniD· 1 shared Guodong ZhangiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Rebecca L. BellORCID

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2 papers

Recent·Most cited

GenomicsFrontiers in MicrobiologyPeer-reviewedAug 2, 2023

bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting.

Kranti Konganti, Elizabeth A. Reed, Mark K. Mammel…·Padmini Ramachandran

bettercallsal identifies multiple Salmonella serotypes from enrichment cultures using shotgun metagenomics, outperforming existing tools in accuracy and throughput for outbreak analysis.

7 citations

metagenomicsstatistical model

𝕏 PostBluesky

GenomicsGenomicsPeer-reviewedApr 8, 2019

Whole genome sequence analysis of 91 Salmonella Enteritidis isolates from mice caught on poultry farms in the mid 1990s

Jean Y. Guard, Guojie Cao, Yan Luo…·Marc W. Allard

This study uses whole-genome sequencing to analyze 91 Salmonella Enteritidis isolates from mice on poultry farms, identifying SNPs that distinguish isolates and provide biomarkers for outbreak detection.

13 citations

mousewhole-genome sequencing

𝕏 PostBluesky