Author

Umar Khan

Primary ORCID profile (0000-0001-7228-8865 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Umar KhaniD2 papers · Beth Israel Deaconess Medical Center

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:fine-mapping· 1 Research Focus:GWAS / association mapping· 1

Frequent Co-Authors

Abdallah Amr MahmoudiD· 2 shared Adriano De MarinoiD· 2 shared Andrew TerpolovskyiD· 2 shared Biljana NovkovićiD· 2 shared Karatuğ Ozan BircaniD· 2 shared Puya G. YazdiiD· 2 shared Sandra BohniD· 2 shared Varuna BamunusingheiD· 2 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Abdallah Amr MahmoudORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Retracing Human Genetic Histories and Natural Selection Using Precise Local Ancestry Inference

Jon Lerga-Jaso, Biljana Novković, Deepu Unnikrishnan, Varuna Bamunusinghe, Marcelinus R. Hatorangan, Charlie Manson, Haley Pedersen, Alex Osama, Andrew Terpolovsky, Sandra Bohn, Adriano De Marino, Abdallah Amr Mahmoud, Karatuğ Ozan Bircan, Umar Khan, Manfred G. Grabherr, Puya G. Yazdi

Orchestra improves local ancestry inference, revealing admixture patterns in Latin Americans, Ashkenazi Jews, and selection signals in British populations.

bioRxiv · Sep 11, 2023 · PreprintGenomics

A comparative analysis of current phasing and imputation software

Adriano De Marino, Abdallah Amr Mahmoud, Madhuchanda Bose, Karatuğ Ozan Bircan, Andrew Terpolovsky, Varuna Bamunusinghe, Sandra Bohn, Umar Khan, Biljana Novković, Puya G. Yazdi

This study benchmarks phasing and imputation software using three datasets, finding Beagle 5.2 most accurate for common markers and IMPUTE5 for low-frequency markers, while also creating an automated pipeline for customized chip design.

PLoS ONE · Oct 19, 2022Peer-reviewedGenomics