Author

Umesh Khaniya

National Institutes of Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:multiple species· 1 Research Focus:protein folding & dynamics· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Abhishek SingharoyiD· 1 shared Caesar TawfeeqiD· 1 shared Chitrak GuptaiD· 1 shared Gehan RanepuraiD· 1 shared James SongiD· 1 shared Jiyao WangiD· 1 shared Jose Ortiz-SotoiD· 1 shared Junjun MaoiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperBiophysics

Abhishek SingharoyORCID

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2 papers

Recent·Most cited

IgStrand: A universal residue numbering scheme for the Immunoglobulin-fold (Ig-fold) to study Ig-Proteomes and Ig-Interactomes

Caesar Tawfeeq, Jiyao Wang, Umesh Khaniya, Thomas Madej, James Song, Ravinder Abrol, Philippe Youkharibache

The paper introduces IgStrand, a universal residue numbering scheme for Ig-folds to enable systematic annotation and analysis of Ig-proteomes and Ig-interactomes across species.

PLoS Computational Biology · Apr 14, 2025Peer-reviewedBioinformatics

Finding the E-Channel Proton Loading Sites by Calculating the Ensemble of Protonation Microstates

Md. Raihan Uddin, Umesh Khaniya, Chitrak Gupta, Junjun Mao, Gehan Ranepura, Rongmei Judy Wei, Jose Ortiz-Soto, Abhishek Singharoy, M. R. Gunner

The paper identifies proton loading sites in Complex I by analyzing protonation microstates using MCCE and Molecular Dynamics simulations.

Biochimica et Biophysica Acta (BBA) - Bioenergetics · Oct 21, 2024Peer-reviewedBiophysics