Author

Vivek Agarwal

University of California, Los Angeles

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Eleazar EskiniD· 2 shared Seungmo LeeiD· 2 shared William O'BrieniD· 2 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersGenomics

Eleazar EskinORCID

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2 papers

Recent·Most cited

taxutils: Tools for managing and operating on NCBI taxonomy and accession mappings

William O'Brien, Seungmo Lee, Vivek Agarwal, Eleazar Eskin

The paper introduces taxutils, a tool for managing NCBI taxonomy and accession mappings, and demonstrates its use in assessing assembly quality through taxonomic mapping analysis.

bioRxiv · Sep 24, 2026 · PreprintGenomics

TDKC (Target Distilled K-mer Classifier): Ultrafast and Memory-Efficient Sequence Classification for Target Pathogen Diagnostics

Seungmo Lee, Vivek Agarwal, William O'Brien, Eleazar Eskin

TDKC improves metagenomic pathogen detection by reducing memory and computational costs while maintaining accuracy.

bioRxiv · Aug 6, 2026 · PreprintBioinformatics