Author

Wanqi Li

Peking University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Organism:E. coli· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Gang XueiD· 2 shared Zhiyuan LiiD· 2 shared Di ZhangiD· 1 shared Hao DongiD· 1 shared Hongcheng Chen· 1 shared Kexin Huang· 1 shared Kexin Zhen· 1 shared Lei ZhangiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersSystems Biology

Gang XueORCID

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3 papers

Recent·Most cited

Graph-based tracing of dynamically functioning gene circuits in cell fate decisions with isoform resolution

Wanqi Li, Hao Dong, Zihan Zhou, Wenlin Fan, Yutong Zhou, Xiaochun Yang, Gang Xue, Zhiyuan Li

The paper introduces TFA (Transcription Factor Activity) to infer TF-TF interactions with high fidelity, outperforming expression-based methods and revealing isoform-level heterogeneity in regulatory circuits.

bioRxiv · Oct 21, 2025 · PreprintSystems Biology

Modular Engineering of Escherichia coli for Enhanced Nickel Uptake, Survival, Biomineralization, and Hydrogen-Supported Bioremediation

Yi Shi, Ruiwen Ma, Qi Lin, Xujie Tan, Lin Chen, Yuhan Wang, Kexin Huang, Ziming Suo, Yuhan Li, Hongcheng Chen, Zhengchan Chen, Xueting Chen, Wanqi Li, Kexin Zhen

This paper engineers Escherichia coli with four modules to enhance nickel uptake, survival, biomineralization, and hydrogen-based bioremediation.

bioRxiv · Apr 13, 2025 · PreprintSynthetic Biology

A Logic-incorporated Gene Regulatory Network Deciphers Principles in Cell Fate Decisions

Gang Xue, Xiaoyi Zhang, Wanqi Li, Lu Zhang, Zongxu Zhang, Xiaolin Zhou, Di Zhang, Lei Zhang, Zhiyuan Li

This study constructs a logic-incorporated gene regulatory network model to analyze how regulatory logic and noise influence cell fate decisions in differentiation and reprogramming.

eLife · Sep 27, 2023Peer-reviewedSystems Biology