A scalable computational framework for predicting gene expression from candidate cis-regulatory elements
Qinhu Zhang, Siguo Wang, Zhipeng Li, Wenzheng Bao, Wenjian Liu, De-Shuang Huang
This paper introduces ScPGE, a framework predicting gene expression from cis-regulatory elements using convolutional neural networks and transformers, showing improved accuracy in identifying enhancer-gene interactions.
Genome Research · Jan 16, 2026Peer-reviewedBioinformatics