Evaluation of Mycobacterium Tuberculosis enrichment in metagenomic samples using ONT adaptive sequencing and amplicon sequencing for identification and variant calling
Junhao Su, Wui Wang Lui, Yan-Lam Lee, Zhenxian Zheng, G. G. Siu, Timothy Ting-Leung Ng, Tong Zhang, Tommy Tsan‐Yuk Lam, Hiu-Yin Lao, Wing-Cheong Yam, Kingsley King-Gee Tam, Kenneth Siu-Sing Leung, Tak‐Wah Lam, Amy Wing-Sze Leung, Ruibang Luo
This study compares Oxford Nanopore adaptive sequencing and PCR amplicon sequencing for detecting Mycobacterium Tuberculosis in metagenomic samples and calls variants, with an open-source analysis framework.
bioRxiv · Dec 17, 2022 · PreprintBioinformatics