Tommy Tsan‐Yuk Lam

The paper updates clade designations for H5N1 avian influenza viruses based on phylogenetic analysis of HA gene sequences from multiple regions.

The paper develops datasets for Nextclade to enable rapid and accurate clade assignment of avian influenza A(H5) viruses, validated against existing tools.

The paper introduces TIPars, an algorithm for efficiently expanding phylogenies with new genome sequences, showing it outperforms existing methods on multiple datasets.

This study compares Oxford Nanopore adaptive sequencing and PCR amplicon sequencing for detecting Mycobacterium Tuberculosis in metagenomic samples and calls variants, with an open-source analysis framework.

Ggtree creates a serialized data object for visualizing phylogenetic trees with associated annotations, enabling data reuse and reproducibility.