Author

Xingyu Li

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Neuroscience· 2 Animal Behavior & Cognition· 1 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Bin MiniD· 2 shared Yiteng Zhang· 2 shared Chen WangiD· 1 shared Fangting LiiD· 1 shared Fei FaniD· 1 shared Gouki OkazawaiD· 1 shared Hao DuiD· 1 shared Hengdong He· 1 shared

Activity by Year

2025-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersNeuroscience

Bin MinORCID

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Author profile →

5 papers

Recent·Most cited

Distinct RNA-RNA spatial interaction sub-networks of transcription factors in hepatic cells

Yuan Yang, Jun Xu, Hengdong He, Yuanling Tang, Xingyu Li, Yunhan Jing, Chen Wang, Yan Ding, Mingzhou Li, Qianzi Tang

The paper uses RIC-seq and integrates multi-omics data to classify transcription factors into two clusters based on RNA-RNA spatial interactions and their genomic and clinical features.

bioRxiv · Sep 18, 2026 · PreprintGenomics

Acoustic Characteristics of Low-Frequency Vocalizations of Bryde's Whales (Balaenoptera edeni edeni) in the Weizhou Island Waters of the Beibu Gulf, China

Yining Yang, Xingyu Li, Make Li, Yaoyao Zhang, Mo Chen, Fei Fan, K Wang, Hao Du

The paper analyzes low-frequency vocalizations of Bryde's whales in Chinese coastal waters, finding correlations between call parameters and potential acoustic masking by vessel noise.

bioRxiv · Jun 23, 2026 · PreprintAnimal Behavior & Cognition

Discovering Novel Circuit Mechanisms in Higher Cognition through Factor-Centric Recurrent Neural Network Modeling

Yiteng Zhang, Xingyu Li, Xuewen Shen, Fangting Li, Gouki Okazawa, Liping Wang, Jianfeng Feng, Bin Min

This paper introduces a factor-centric RNN framework to uncover interpretable circuit mechanisms in higher cognition, identifying novel mechanisms in working memory and decision-making.

bioRxiv · Apr 17, 2026 · PreprintNeuroscience

Opening the Black Box of Neural Computation from Neural Recordings with Gain-Modulated Linear Dynamical System

Yiteng Zhang, Zixiong Wang, Xingyu Li, Bin Min

This paper introduces a method to infer neural computation mechanisms from recordings by decomposing dynamics into gain and connectivity components, revealing coexisting selection mechanisms in decision-making tasks.

bioRxiv · Mar 16, 2026 · PreprintNeuroscience

Single-cell alternative polyadenylation analysis reveals mechanistic insights of COVID-19-associated neurological and psychiatric effects

Qun Chen, Ying Gu, Shuai Liu, Xingyu Li, Ruizhi Xu, Ruixi Ye, Jingjing Yang, Wanshan Ning

The paper analyzes single-cell alternative polyadenylation (APA) in frontal cortex cells from COVID-19 patients and controls, identifying APA changes linked to neurological and psychiatric sequelae.

PLoS ONE · Dec 26, 2025Peer-reviewedBioinformatics