Author

Y.-L. Tan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:protein structure prediction· 3 Approach:deep learning· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Z.-J. Tan· 3 shared S. Yu· 2 shared X. Wang· 2 shared Y.-Z. Shi· 2 shared A. Eickelkamp· 1 shared B. Zhang· 1 shared B.-G. Zhang· 1 shared C.-J. Feng· 1 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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3 shared papersBiophysics

Z.-J. Tan

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Author profile →

5 papers

Recent·Most cited

Ab initio predictions for 3D structure and stability of single- and double-stranded DNAs in ion solutions

Z.-C. Mu, Y.-L. Tan, B.-G. Zhang, J. Liu, Y.-Z. Shi

This paper presents a coarse-grained model to predict 3D structures and stability of single- and double-stranded DNAs in ion solutions from their sequences, achieving accurate results for various DNA types and ion effects.

PLOS Computational Biology · Oct 19, 2022Peer-reviewedBiophysics

FebRNA: an automated fragment-ensemble-based model for building RNA 3D structures

L. Zhou, X. Wang, S. Yu, Y.-L. Tan, Z.-J. Tan

FebRNA predicts RNA 3D structures using a fragment-ensemble-based approach, achieving reliable results for complex RNA topologies.

bioRxiv · Apr 25, 2022Biophysics

cgRNASP: coarse-grained statistical potentials with residue separation for RNA structure evaluation

Y.-L. Tan, X. Wang, S. Yu, B. Zhang, Z.-J. Tan

The paper introduces cgRNASP, a series of coarse-grained statistical potentials for RNA 3D structure evaluation, showing comparable or better performance than all-atom methods with higher efficiency.

bioRxiv · Mar 13, 2022Biophysics

A mechanism for sensing of and adaptation to K+ deprivation in plants

F.-L. Wang, Y.-L. Tan, L. Wallrad, X.-Q. Du, A. Eickelkamp, Z.-F. Wang, G.-F. He, J.-P. Han, I. Schmitz-Thom, W.-H. Wu, J. Kudla, Y. Wang

The paper identifies a K+ sensing mechanism in plant roots that triggers ROS signals and activates K+ uptake transporters and Casparian strip maturation.

bioRxiv · Mar 21, 2020 · PreprintPlant Biology

Modeling structure, stability and flexibility of double-stranded RNAs in salt solutions

L. Jin, Y.-Z. Shi, C.-J. Feng, Y.-L. Tan, Z.-J. Tan

This study develops a coarse-grained model to predict 3D structure, stability, and flexibility of dsRNAs in salt solutions, showing improved accuracy with electrostatic potential inclusion.

bioRxiv · Jun 5, 2018Biophysics