Author

Yajing Yuan

Shanghai Jiao Tong University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Research Focus:protein structure prediction· 2 Approach:contrastive learning· 1 Approach:deep learning· 1 Approach:large language model· 1 Research Focus:protein design· 1

Frequent Co-Authors

Dacheng TaoiD· 1 shared Dong-Qing WeiiD· 1 shared Haowei Wang· 1 shared Heqi SuniD· 1 shared Jia-Yi LiiD· 1 shared Kanglu Zhao· 1 shared Lan Yang· 1 shared Mengyuan JiniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Dacheng TaoORCID

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2 papers

Recent·Most cited

RegimeFormer: A Large Protein Model of Global Perturbation Regimes

Siyuan Ma, Yi Chai, Yi Wu, Qixin Zhang, Yajing Yuan, Kanglu Zhao, Zhikang Chen, Haowei Wang, Shuying Cao, Xiaolei Yu, Xiangfei Han, Yun Liu, Yang Liu, Tingting Zhu, Dacheng Tao

RegimeFormer identifies protein perturbation regimes using a large-scale model and atlas, improving prediction accuracy and enabling downstream applications.

bioRxiv · Aug 30, 2026 · PreprintBioinformatics

EnzOracle: Mechanism-aware prediction of enzyme environmental adaptation via a classification-guided mixture-of-experts framework

Qi Gao, Zhongcheng Fang, Yajing Yuan, Mengyuan Jin, Heqi Sun, Zhennan Peng, Lan Yang, Jia-Yi Li, Dong-Qing Wei

EnzOracle predicts enzyme environmental adaptation traits from sequence using a mixture-of-experts framework, showing strong accuracy and mechanism-aware validation.

bioRxiv · Jun 6, 2026 · PreprintBioinformatics