Author

Yat Fei Cheung

Virginia Tech

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Amy J. PrudeniD· 2 shared Connor BrowniD· 2 shared Haoqiu SongiD· 2 shared Liqing ZhangiD· 2 shared Peter J. VikeslandiD· 2 shared Ahmad Khan· 1 shared Ali Raza ButtiD· 1 shared Delaney SneadiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Amy J. PrudenORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

CIWARS: a web server for waterborne antibiotic resistance surveillance using longitudinal metagenomic data

Muhit Islam Emon, Yat Fei Cheung, James Stoll, Monjura Afrin Rumi, Connor Brown, Joung Min Choi, Nazifa Ahmed Moumi, Shafayat Ahmed, Haoqiu Song, Justin Sein, Shunyu Yao, Ahmad Khan, Suraj Gupta, Rutwik Kulkarni, Ali Raza Butt, , Liqing Zhang

CIWARS is a web server for analyzing longitudinal metagenomic data to detect antibiotic resistance genes and assess AR risks in environmental samples.

bioRxiv · Oct 30, 2024 · PreprintBioinformatics

Kairos infers in situ horizontal gene transfer in longitudinally sampled microbiomes through microdiversity-aware sequence analysis

Connor Brown, Yat Fei Cheung, Haoqiu Song, Delaney Snead, Peter J. Vikesland, Amy J. Pruden, Liqing Zhang

Kairos detects in situ horizontal gene transfer in microbiomes using time-series metagenomic data and competitive read alignment, improving detection of antibiotic resistance genes compared to MAG-based methods.

bioRxiv · Oct 24, 2023 · PreprintBioinformatics