Author

Yingshu Zhang

Soochow University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Li Zhang· 2 shared Haicheng Rao· 1 shared Mengge LiiD· 1 shared Mengge LiiD· 1 shared Qi Yan· 1 shared Rong Gao· 1 shared Xiaobo Qian· 1 shared Xin‐Chun Xu· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Li Zhang

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 28, 2026

✦ In-depth digest

AnnoAudit: a marker-based protocol for auditing single-cell atlas annotations reveals systematic, state-dependent annotation failure in a widely used traumatic brain injury resource

Li Zhang, Qi Yan, Haicheng Rao…·Rong Gao

A marker audit finds 97.9% of CEREBRI's 45,051 official 'glutamatergic neuron' cells are not glutamatergic (four-check composite 82.6%), creating false ion-channel and OXPHOS signals; true neurons show acute KCNC3 up-regulation.

DOI 10.64898/2026.09.03.749125

mousehuman

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NeurosciencebioRxivPreprintSep 14, 2026

Conserved microglial programmes, non-transferable classifiers: boundaries of the single-cell TBI molecular clock

Yan Qi, Zhang Li, Li Zhang…·Yingshu Zhang

This paper evaluates the transferability of a single-cell molecular clock for traumatic brain injury (TBI) staging across datasets, finding poor cross-dataset generalization and identifying a conserved microglial gene-expression programme as the reproducible component.

DOI 10.64898/2026.09.07.749982

mousescRNA-seq

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