Estimating and correcting index hopping misassignments in single-cell RNA-seq data
Lingling Miao, Loren Collado, Savannah Barkdull, Yoshine Saito, Jay‐Hyun Jo, Jung Min Han, Stefania Dell’Orso, Michael C. Kelly, Heidi H. Kong, Isaac Brownell
The paper estimates and corrects index hopping misassignments in scRNA-seq data by analyzing signature genes across cell types and adjusting expression levels.
bioRxiv · Oct 21, 2024 · PreprintGenomics