Author

Yuchen Shao

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

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Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:spatial transcriptomics· 1 Organism:zebrafish· 1

Frequent Co-Authors

Hao CheniD· 1 shared Hongliang ZhouiD· 1 shared Jose Lugo-MartineziD· 1 shared Sarah I. Baalbaki· 1 shared Young Je Lee· 1 shared Zoe RudnickiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Hao ChenORCID

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1 paper

Recent·Most cited

SpaTRACE: Spatiotemporal recurrent auto-encoder for reconstructing signaling and regulatory networks from spatiotemporal transcriptomics data

Hongliang Zhou, Hao Chen, Zoe Rudnick, Sarah I. Baalbaki, Yuchen Shao, Young Je Lee, Jose Lugo-Martinez

SpaTRACE jointly infers gene regulatory networks and cell-cell signaling from spatial transcriptomics data, outperforming existing methods in synthetic benchmarks and revealing novel interactions in development and regeneration.

bioRxiv · Nov 20, 2025 · PreprintBioinformatics