Author

Yue Fan

Janssen Research & Development (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:eQTL / molecular QTL mapping· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Shiquan SuniD· 2 shared Gregory C. Fanning· 1 shared Guang YangiD· 1 shared Guofeng MengiD· 1 shared Jenny TungiD· 1 shared Lei LiiD· 1 shared Qinke PengiD· 1 shared Tauras P. VilgalysiD· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersGenomics

Shiquan SunORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Powerful and accurate detection of temporal gene expression patterns from multi-sample multi-stage single cell transcriptomics data with TDEseq

Yue Fan, Lei Li, Shiquan Sun

TDEseq detects temporal gene expression patterns in multi-sample, multi-stage single-cell transcriptomics data with improved power and calibration.

Genome biology · Apr 15, 2024Peer-reviewedGenomics

IMAGE:High-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis

Yue Fan, Tauras P. Vilgalys, Shiquan Sun, Qinke Peng, Jenny Tung, Xiang Zhou

The paper introduces IMAGE, a statistical method for mQTL mapping that improves detection of genetic effects on DNA methylation by accounting for bisulfite sequencing data and allele-specific patterns.

Genome biology · Oct 24, 2019Peer-reviewedGenomics

TSD: A computational tool to study the complex structural variants using PacBio targeted sequencing data

Guofeng Meng, Ying Ching Tan, Yue Fan, Yan Wang, Guang Yang, Gregory C. Fanning, Yang Qiu

TSD is a tool for discovering complex structural variants using PacBio targeted sequencing data, showing better performance than other tools in detecting complex genomic structural variants.

G3 Genes Genomes Genetics · Mar 8, 2019Peer-reviewedBioinformatics