Author

Yuka Yasuda

Toyohashi University of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Atsushi NakabachiiD· 3 shared Yuu HiroseiD· 3 shared Hiromitsu InoueiD· 1 shared Igor MalenovskýiD· 1 shared Ilia Gjonov· 1 shared Jörn PieliD· 1 shared Rena Takasu· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 14 mutual co-author links

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3 shared papersGenomics

Atsushi NakabachiORCID

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3 papers

Recent·Most cited

Dynamic evolution of diaphorin biosynthetic genes against a background of genome conservation in Profftella

Yuka Yasuda, Jörn Piel, Igor Malenovský, Ilia Gjonov, Yuu Hirose, Atsushi Nakabachi

The paper compares Profftella genomes across Diaphorina species, finding conserved gene organization but lineage-specific variation in diaphorin biosynthetic genes, particularly in ACP domain amplification.

bioRxiv · Oct 31, 2026 · PreprintGenomics

Diaphorin induces extensive transcriptional remodeling of translation, transport, metabolism, and stress responses in Escherichia coli

Yuka Yasuda, Rena Takasu, Yuu Hirose, Atsushi Nakabachi

This study examines how diaphorin affects E. coli transcription, revealing widespread changes in translation, metabolism, transport, and stress responses.

bioRxiv · Oct 21, 2026 · PreprintMicrobiology

Highly reduced complementary genomes of dual bacterial symbionts in the mulberry psyllid Anomoneura mori

Yuka Yasuda, Hiromitsu Inoue, Yuu Hirose, Atsushi Nakabachi

This study analyzes the genomes of dual bacterial symbionts in the mulberry psyllid, revealing their reduced size, AT-rich composition, and conserved gene functions.

bioRxiv · May 10, 2024 · PreprintGenomics