Author

Yuqi Shan

Carnegie Mellon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Fuhai LiiD· 1 shared Jared M. LalmansinghiD· 1 shared Jiang TaniD· 1 shared Jingyi Jessica LiiD· 1 shared Nahyun KongiD· 1 shared Philip PayneiD· 1 shared Richard Head· 1 shared Ruiwen ZhouiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Fuhai LiORCID

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1 paper

Recent·Most cited

SnakeAltPromoter Facilitates Differential Alternative Promoter Analysis

Jiang Tan, Yuqing Wu, Ruteja A. Barve, Jared M. Lalmansingh, Fuhai Li, Philip Payne, Nahyun Kong, Sheng Chih Jin, Yuqi Shan, Ruiwen Zhou, Xinzhou Ge, Jingyi Jessica Li, Richard Head, Yidan Sun

SnakeAltPromoter provides a reproducible framework for differential alternative promoter analysis using RNA-seq, benchmarked against CAGE data and scalable for large datasets.

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedBioinformatics