Author

Yuyang Tao

ShanghaiTech University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Assay:protein sequence· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Anthony GitteriD· 2 shared Fajie YuaniD· 2 shared Feng JuiD· 2 shared Fengyuan Dai· 2 shared Jin SuiD· 2 shared Xibin ZhouiD· 2 shared An‐Ping ZengiD· 1 shared Anum Azam GlasgowiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Anthony GitterORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

An Integrated Framework for Transcriptomic Characterization and Lorentzian Hyperbolic Visualization of a High-Risk Topological Branch in Alzheimer's Disease

Chenhao Zeng, Zhibin Pu, Yuyang Tao, Wenshi Wei, Jian Zhao, Mingliang Cai, Shufei Ge

The paper develops an analytical framework to characterize transcriptomic variation in a high-risk topological branch of Alzheimer's disease and introduces Lorentz t-SNE for hyperbolic visualization of transcriptomic data.

bioRxiv · Jun 17, 2026 · PreprintBioinformatics

Democratizing Protein Language Model Training, Sharing and Collaboration

Jin Su, Zhikai Li, Tianli Tao, Chenchen Han, Yan He, Fengyuan Dai, Qingyan Yuan, Yuan Gao, Tong Si, Xuting Zhang, Yuyang Zhou, Junjie Shan, Xibin Zhou, Xing Chang, Shiyu Jiang, , Sergey Ovchinnikov

The paper introduces SaprotHub, a platform that simplifies training and sharing of protein language models, enabling non-experts to build and collaborate on customized models.

Nature Biotechnology · Oct 24, 2025Peer-reviewedBioinformatics

Decoding the Molecular Language of Proteins with Evolla

Xibin Zhou, Chenchen Han, Yingqi Zhang, Huan Du, Jiayuan Tian, Jin Su, Renju Liu, Kai Zhuang, Shiyu Jiang, Anthony Gitter, Li Liu, Huayu Li, Meiqi Wu, Shiyang You, Zichen Yuan, , Fajie Yuan

Evolla, a protein-language model, improves functional inference and discovers novel proteins through natural language queries and benchmarking.

bioRxiv · Jan 5, 2025 · PreprintBioinformatics