Author

Zachary R. Lewis

Allen Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Assay:proteomics· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alana I. MendelsohniD· 1 shared Amir Khalili· 1 shared Amy TorkelsoniD· 1 shared Ana Mafalda VicenteiD· 1 shared Ananya Chakravarth· 1 shared Anish Bhaswanth ChakkaiD· 1 shared Arena ManningiD· 1 shared Ayodele J. OmotosoiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperNeuroscience

Alana I. MendelsohnORCID

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2 papers

Recent·Most cited

NeurosciencebioRxivPreprintApr 13, 2026

The External Globus Pallidus is a Basal Ganglia Output Hub with Action-Specific Circuits

Zirong Gu, Zachary R. Lewis, Jonathan C. Y. Tang…·Rui M. Costa

The paper reveals the external globus pallidus (GPe) as a basal ganglia output hub with distinct subpopulations that mediate specific behaviors through projection-specific circuits.

DOI 10.64898/2026.04.12.718022

mousescRNA-seq

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedNov 28, 2023

A Machine Learning One-Class Logistic Regression Model to Predict Stemness in Single Cell Transcriptomics and Spatial Omics Datasets

Felipe Segato Dezem, Maycon Marção, Bassem Ben Cheikh…·Jasmine Plummer

The paper applies a one-class logistic regression model to predict stemness in single-cell and spatial omics datasets without requiring cell annotation.

8 citations

scRNA-seqspatial transcriptomics

𝕏 PostBluesky