Author

Zhiyu You

Xiamen University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:Hi-C· 1

Frequent Co-Authors

Qiyuan LiiD· 2 shared Ying ZhouiD· 2 shared Jialiang HuangiD· 1 shared Jialin ZhaoiD· 1 shared Jiayang Guo· 1 shared Jun ReniD· 1 shared Longbiao CheniD· 1 shared Q. Yang· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Qiyuan LiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Benchmarking RNA velocity methods across 17 independent studies

Ya Hong Luo, Jun Ren, Q. Yang, Zhiyu You, Ying Zhou, Qingqing Qin, Qiyuan Li

This study benchmarks 14 RNA velocity methods across 17 datasets, finding no single method outperforms all others and highlighting the need for method comparison in analysis.

Cell Reports Methods · Mar 30, 2026Peer-reviewedBioinformatics

Chrombus-XMBD: A Graph Generative Model Predicting 3D-Genome, ab initio from Chromatin Features

Yuanyuan Zeng, Zhiyu You, Jiayang Guo, Jialin Zhao, Ying Zhou, Jialiang Huang, Xiaowen Lyu, Longbiao Chen, Qiyuan Li

Chrombus-XMBD predicts 3D-genome structures from chromatin features using a graph generative model, outperforming existing methods and showing cross-species generalizability.

bioRxiv · Aug 2, 2023 · PreprintBioinformatics