Author

Ziyuan Xing

Westlake University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Tiannan GuoiD· 2 shared Yingying SuniD· 2 shared A. S. Jun· 1 shared Bang-yan Li· 1 shared Enci Cai· 1 shared Huan GaoiD· 1 shared Jiaying Lin· 1 shared Jing YuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMicrobiology

Tiannan GuoORCID

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2 papers

Recent·Most cited

Population-based metaproteomics reveals functional associations between gut microbiota and phenotypes

Shuang Liang, Yingying Sun, Zelei Miao, Bang-yan Li, Ziyuan Xing, Yuting Xie, Enci Cai, Sainan Li, Pu Liu, Min Yang, Menglei Shuai, Wanglong Gou, Wenhao Jiang, Youming Wang, Huan Gao, , Tiannan Guo

This study uses population-based metaproteomics to identify functional associations between gut microbiota and 39 phenotypes, including 1,381 features related to Type 2 Diabetes.

Cell Metabolism · Mar 13, 2026Peer-reviewedMicrobiology

DDA-BERT: leveraging transformer architecture pre-training for data-dependent acquisition mass spectrometry-based proteomics

A. S. Jun, Pu‐Kun Liu, Yingying Sun, Jiaying Lin, Xiaofan Zhang, Zongxiang Nie, Yuqi Zhang, Ziyuan Xing, Yi Chen, Tiannan Guo

DDA-BERT improves PSM rescoring in proteomics using a transformer-based model trained on 95 million human spectra, outperforming existing methods across species and sample types.

bioRxiv · Nov 13, 2024 · PreprintBioinformatics