Daniel Schlauch

This paper introduces COBRA, a method to correct batch effects in gene co-expression networks, showing that standard batch correction does not fully eliminate spurious co-expression associations.

The paper introduces netZoo, an open-source software suite for analyzing biological networks, demonstrating its use on cancer cell line data to identify drug resistance and cancer development factors.

This paper introduces MONSTER, a method to identify transcription factor drivers of cell state transitions using gene regulatory network models, applied to COPD studies to find persistent regulatory signals.