Author

Robert E. Jones

Texas Tech UniversityORCID 0000-0001-5227-4773Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 2 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:benchmarking· 2 Assay:DNA methylation· 2 Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:experimental assay· 1 Organism:multiple species· 1

Frequent Co-Authors

Alexander K. TiceiD· 4 shared Alfredo L. Porfírio‐SousaiD· 3 shared Matthew W. BrowniD· 3 shared Daniel J. G. LahriD· 2 shared Bruce D. S. TayloriD· 1 shared Carl Seaquist· 1 shared Elias TayloriD· 1 shared Erin P. Jones· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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4 shared papersEvolutionary Biology

Alexander K. TiceORCID

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4 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintAug 22, 2026

Integrative morphology and phylogenetics of Arcellidae (Amoebozoa:Arcellinida), with redescription of Arcella leidyana and Arcella artocrea and description of Galeripora purdoni sp. nov.

Bruce D. S. Taylor, Alfredo L. Porfírio‐Sousa, Robert E. Jones…·Alexander K. Tice

The paper integrates morphology and phylogenetics to redescribe and classify Arcellidae species, revealing hidden diversity and a new species.

DOI 10.64898/2026.08.19.745684

statistical modelphylogenetics / evolution

𝕏 PostBluesky

Evolutionary BiologybioRxivPreprintAug 20, 2025

Pyrumthecina Infraorder Nov.: Revisiting the morphological diversity and identifying the phylogenetic home of Argynnia within Arcellinida (Tubulinea:Amoebozoa)

Alfredo L. Porfírio‐Sousa, Maria Beatriz Gomes e Souza, Robert E. Jones…·Alexander K. Tice

This study resolves the phylogenetic placement of Argynnia by analyzing genomic data and proposes a new infraorder and family to accommodate it within Arcellinida.

DOI 10.1101/2025.08.20.671167

DNA methylationstatistical model

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 19, 2025

CSI-SSU: Phylogenetic contamination screening of genomic datasets, demonstrated on the Protist 10,000 Genomes (P10K) database

Alfredo L. Porfírio‐Sousa, Robert E. Jones, Matthew W. Brown…·Alexander K. Tice

CSI-SSU screens genomic datasets for contamination and taxonomic accuracy using phylogenetic methods, demonstrating its utility on the P10K database.

1 citation

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 30, 2023

A PhyloFisher utility for nucleotide-based phylogenomic matrix construction; nucl_matrix_constructor.py

Robert E. Jones, Erin P. Jones, Alexander K. Tice, Matthew W. Brown

The paper introduces nucl_matrix_constructor.py, a tool to build nucleotide-based phylogenomic matrices using curated DNA sequences from the PhyloFisher database.

2 citations

multiple speciesDNA methylation

𝕏 PostBluesky