Author

Ziqi Xu

South China Agricultural UniversityORCID 0000-0001-5272-8456Unclaimed ORCID profile · follow to get notified of new preprints

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Ziqi Xu4 papers · University of California, Los Angeles

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein sequence· 2 Approach:contrastive learning· 1 Organism:human· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Yanjie WeiiD· 2 shared Ganzhang Zheng· 1 shared Haowen Zhao· 1 shared Huiling Zhang· 1 shared Huiling ZhangiD· 1 shared Jianqiang ZhengiD· 1 shared Junye Huang· 1 shared Shaozhen Cai· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Yanjie WeiORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 17, 2026

VarDCL: A Multimodal PLM-Enhanced Framework for Missense Variant Effect Prediction via Self-distilled Contrastive Learning

Huiling Zhang, Ganzhang Zheng, Ziqi Xu…·Yanjie Wei

VarDCL predicts pathogenic missense variants by integrating multimodal protein language model embeddings and self-distilled contrastive learning, achieving high performance on clinical variants.

DOI 10.64898/2026.03.13.711612

humanprotein sequence

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BioinformaticsLecture notes in computer sciencePeer-reviewedJul 31, 2025

Allo-PED: Leveraging protein language models and structure features for allosteric site prediction

Xiaochuan Chen, Jianqiang Zheng, Zhenni Huang…·Huiling Zhang

AlloPED predicts allosteric sites using protein language models and machine learning, achieving high accuracy on benchmark datasets.

4 citationstop 1%

protein sequencedeep learning

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