Author

Alan Sabirsh

AstraZeneca (Sweden)ORCID 0000-0001-5310-0281Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:imaging· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Carolina WählbyiD· 2 shared Ida‐Maria SintorniD· 2 shared Andreas HellanderiD· 1 shared Ankit GuptaiD· 1 shared Ben BlameyiD· 1 shared Håkan WieslanderiD· 1 shared Martin DahlöiD· 1 shared Ola SpjuthiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Carolina WählbyORCID

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2 papers

Recent·Most cited

BioinformaticsIEEE Journal of Biomedical and Health InformaticsPeer-reviewedMay 24, 2022

SimSearch: A Human-in-the-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images

Ankit Gupta, Alan Sabirsh, Carolina Wählby, Ida‐Maria Sintorn

SimSearch enables fast ROI detection in microscopy images through user-guided deep learning with minimal interaction and prior information.

14 citations

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedMar 1, 2021

Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit

Ben Blamey, Salman Zubair TOOR, Martin Dahlö…·Andreas Hellander

The paper introduces the HASTE Toolkit, a cloud-native toolkit for intelligent data pipelines that prioritize resource usage based on data content, demonstrating it in microscopy imaging case studies.

4 citations

imagingexperimental assay

𝕏 PostBluesky