Joerg Graf

The paper characterizes temporal changes in biofilm communities on aquaculture surfaces over 80 days, identifying distinct microbial succession patterns and key taxa associated with different stages.

This paper compares StrainID long-read amplicon sequencing to short-read amplicons for microbiome analysis, showing similar performance overall but better phylogenetic diversity and taxonomic classification in saliva samples.

This paper identifies Pseudomonas isolates from trout aquaculture biofilms that inhibit fish and human pathogens and disrupt biofilms, suggesting potential for probiotic or antimicrobial applications.

This study identifies and characterizes AvsA, a surface layer protein in Aeromonas veronii, showing its role in antibiotic resistance, biofilm formation, and host colonization.

The paper evaluates two methods for detecting Flavobacterium pathogens in aquaculture environments, showing both accurately identify pathogens and provide complementary advantages for surveillance and microbial profiling.

The paper evaluates genome assembly strategies for diverse bacteria using MinION long-read sequencing and finds that combining MinION and Illumina reads provides the most contiguous and accurate assemblies.