Author

David J. Chen

Western UniversityORCID 0000-0001-5531-9180Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:human· 1 Assay:scRNA-seq· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Alaine Naidas· 1 shared Camila P. E. de SouzaiD· 1 shared Erik ChristenseniD· 1 shared Gurjit S. RandhawaiD· 1 shared Kathleen Allen HilliD· 1 shared Lila Kari AiD· 1 shared Maximillian P. M. SoltysiakiD· 1 shared Mia HusićiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alaine Naidas

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2 papers

Recent·Most cited

BioinformaticsPLoS ONEPeer-reviewedSep 9, 2022

TMExplorer: A Tumour Microenvironment Single-cell RNAseq Database and Search Tool

Erik Christensen, Alaine Naidas, David J. Chen…·Parisa Shooshtari

TMExplorer provides a database and R tool for accessing and analyzing TME scRNA-seq data from 12 cancer types.

12 citations

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BioinformaticsBioinformaticsPeer-reviewedMar 4, 2022

SomaticSiMu: a mutational signature simulator

David J. Chen, Gurjit S. Randhawa, Maximillian P. M. Soltysiak…·Kathleen Allen Hill

SomaticSiMu simulates mutational signatures in genomic sequences and evaluates its reliability using machine learning and mutational signature extraction.

DOI 10.1093/bioinformatics/btac128

whole-genome sequencingstatistical model

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