Author

Yi‐Chih Chen

Academia SinicaORCID 0000-0001-5649-5661Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:non-human primate· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Che-Yi LiniD· 2 shared Jr‐Kai YuiD· 2 shared Yi‐Hsien SuiD· 2 shared Ann E. CuttingiD· 1 shared Jun-Ru LeeiD· 1 shared Mei‐Yeh Jade LuiD· 1 shared R. Andrew CameroniD· 1 shared Shen‐Ju ChouiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersEvolutionary Biology

Che-Yi LinORCID

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintNov 27, 2025

A 3D Amphioxus Brain Atlas Illuminates the Blueprint of the Ancestral Chordate Brain

Che-Yi Lin, Wen-Hsin Hsu, Mei‐Yeh Jade Lu…·Jr‐Kai Yu

This study creates a 3D amphioxus brain atlas using single-nucleus RNA-seq and spatial transcriptomics, revealing ancestral brain organization and highlighting vertebrate innovations.

1 citation

non-human primatescRNA-seq

𝕏 PostBluesky

Evolutionary BiologyScience AdvancesPeer-reviewedJul 25, 2025

Deep homology of a brachyury regulatory syntax and origin of the notochord

Tzu-Pei Fan, Jun-Ru Lee, Che-Yi Lin…·Yi‐Hsien Su

The paper identifies an ancient regulatory syntax, SFZE, associated with brachyury across non-chordate and chordate species, suggesting its role in notochord origin through co-option of conserved elements.

2 citations

zebrafishnon-human primate

𝕏 PostBluesky