Author

Jérémie Roux

Centre National de la Recherche ScientifiqueORCID 0000-0001-5712-8660Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Pharmacology & Toxicology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:graph neural network· 1

Frequent Co-Authors

Alain Jean‐MarieiD· 1 shared Augusto Sales de Queiroz· 1 shared Baharia MograbiiD· 1 shared Bernard P. MariiD· 1 shared Caroline LacouxiD· 1 shared Claude PasquieriD· 1 shared Dorian MazauriciD· 1 shared Fadi Abou-ChouchaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

Alain Jean‐MarieORCID

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2 papers

Recent·Most cited

Pharmacology & ToxicologyArchives of ToxicologyPeer-reviewedMar 10, 2026

Single-cell transcriptomics reveals a differential response of human bronchial epithelial cell-types to cadmium chloride

Fadi Abou-Choucha, Rafaël Lopes Goncalves, Thomas Hermet…·Georges Vassaux

The paper uses scRNA-seq to analyze the response of human bronchial epithelial cell types to CdCl2, revealing cell-type-specific transcriptional changes.

DOI 10.1007/s00204-026-04344-9

humanscRNA-seq

𝕏 PostBluesky

Systems BiologyHALPeer-reviewedNov 21, 2021

Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses

Augusto Sales de Queiroz, Guilherme Sales Santa Cruz, Alain Jean‐Marie…·Frédéric Cazals

This paper introduces Genetrank, a method to prioritize genes regulating drug pharmacodynamics using random walks on protein interaction networks, applied to single-cell TRAIL sensitivity data.

DOI 10.1371/journal.pone.0268956

protein sequencestatistical model

𝕏 PostBluesky