Author

Georges Vassaux

Centre National de la Recherche ScientifiqueORCID 0000-0002-1149-7716Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:CRISPR screen· 1

Frequent Co-Authors

Bernard P. MariiD· 2 shared Caroline LacouxiD· 2 shared Kévin LebrigandiD· 2 shared Marine Gautier‐IsolaiD· 2 shared Pascal BarbryiD· 2 shared Roger RezzonicoiD· 2 shared Anna DiamantiD· 1 shared Baharia MograbiiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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2 shared papersPharmacology & Toxicology

Bernard P. MariORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 26, 2026

Allos: an integrated Python toolkit for isoform-level single-cell and spatial in-situ transcriptomics

Eamon M. McAndrew, Anna Diamant, Georges Vassaux…·Kévin Lebrigand

Allos provides a Python framework for isoform-level analysis of single-cell and spatial transcriptomics data, integrating with existing tools and enabling differential isoform usage screening and visualization.

DOI 10.64898/2026.03.24.713944

scRNA-seqspatial transcriptomics

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Pharmacology & ToxicologyArchives of ToxicologyPeer-reviewedMar 10, 2026

Single-cell transcriptomics reveals a differential response of human bronchial epithelial cell-types to cadmium chloride

Fadi Abou-Choucha, Rafaël Lopes Goncalves, Thomas Hermet…·Georges Vassaux

The paper uses scRNA-seq to analyze the response of human bronchial epithelial cell types to CdCl2, revealing cell-type-specific transcriptional changes.

DOI 10.1007/s00204-026-04344-9

humanscRNA-seq

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BioinformaticsFrontiers in BioinformaticsPeer-reviewedMar 4, 2024

A workflow combining single-cell CRISPRi screening and a Sparse supervised autoencoder neural network to detect subtle transcriptomic perturbations induced by lncRNA Knock-Down

Marin Truchi, Caroline Lacoux, Cyprien Gille…·Bernard P. Mari

The paper develops a Sparse supervised autoencoder to detect subtle transcriptomic changes from CRISPRi screens of lncRNAs in lung cancer cells under hypoxia.

5 citations

humanscRNA-seq

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