Liqing Ding

stEDGE reconstructs hierarchical spatial domains and transition interfaces in spatial transcriptomics by using edge-guided methods to capture multiscale organization beyond flat partitions.

panHiTE detects population-specific transposable elements in large-scale plant genomes, improving sensitivity and precision while reducing redundancy and enabling TE-gene associations.

The paper introduces scMustree, a tree-construction algorithm that improves clustering accuracy and reveals functional associations among cell populations in scRNA-seq data.