SeCAT (Sequence Consensus Amplicon Trimming): a simulation-informed Nextflow pipeline for cross-study harmonisation of 16S rRNA metabarcoding datasets
David Terrey, Paula Huber, Emiliano Pereira…·Sebastian Metz
SeCAT is a Nextflow pipeline that harmonizes 16S rRNA metabarcoding datasets by identifying a consensus sequence window and testing its impact on community structure before merging datasets.