Author

Alex J. Dumbrell

School of Life Sciences, University of EssexORCID 0000-0001-6282-3043Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:batch correction / integration· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Alessia BaniiD· 1 shared Allyson WalshiD· 1 shared David TerreyiD· 1 shared Dominika Kňazovická· 1 shared Emiliano PereiraiD· 1 shared İlayda TaşkayaiD· 1 shared Julie Teresa ShapiroiD· 1 shared Kendra L. PhelpsiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Alessia BaniORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 4, 2026

SeCAT (Sequence Consensus Amplicon Trimming): a simulation-informed Nextflow pipeline for cross-study harmonisation of 16S rRNA metabarcoding datasets

David Terrey, Paula Huber, Emiliano Pereira…·Sebastian Metz

SeCAT is a Nextflow pipeline that harmonizes 16S rRNA metabarcoding datasets by identifying a consensus sequence window and testing its impact on community structure before merging datasets.

DOI 10.64898/2026.11.03.763908

metagenomicsdeep learning

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EcologyCase Reports in Veterinary MedicinePeer-reviewedJan 1, 2026

Case report of unusual mortality of Egyptian fruit bat (Rousettus aegyptiacus) in northern Cyprus

Maya Weinberg, Dominika Kňazovická, Rianne Pelgrims…·Julie Teresa Shapiro

The paper reports an unusual bat mortality event in Cyprus, linking Staphylococcus aureus infections to observed clinical signs but noting uncertainty about population-level causes.

2 citationstop 1%

mouseexperimental assay

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