Ruben Weitzman

RNAGym provides a benchmarking framework for RNA fitness, secondary structure, and tertiary structure prediction using diverse datasets and standardized assays.

ProteinGym unifies over 250 deep mutational scans and ~65k clinical variants to benchmark over 70 models in zero-shot and supervised settings; TranceptEVE ranks best overall.

This paper introduces ProteinNPT, a non-parametric transformer for protein property prediction and design, showing improved performance in label-scarce and multi-task settings.