Murphy Angelo

Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with {lambda}-dynamics

This paper uses {lambda}-dynamics to predict RNA binding preferences of human Pumilio, including modified RNAs, showing high accuracy compared to experimental data.

RNAGym: Large-scale Benchmarks for RNA Fitness and Structure Prediction

RNAGym provides a benchmarking framework for RNA fitness, secondary structure, and tertiary structure prediction using diverse datasets and standardized assays.